Kenya, January 13, 2026 - The Controller of Budget (COB) has raised serious concerns over an estimated KSh 10 billion shortfall in the Equalisation Fund, warning that delays in disbursement and funding gaps threaten the delivery of critical services in historically marginalised counties.
According to the latest COB report, at least 10 counties are worst affected by the funding gap, which has slowed the implementation of projects aimed at narrowing development disparities in regions that constitutionally qualify for support under the Equalisation Fund framework.
The warning comes amid growing frustration among county leaders and residents over the slow pace of delivering essential services such as water, health care, and infrastructure in disadvantaged areas. The Equalisation Fund was established under Article 204 of the Constitution to improve access to basic services in marginalised areas, such as water, roads, health facilities, and electricity, to levels enjoyed by other parts of the country.
The fund targets regions that lag behind national development indicators, using a deprivation index that identifies areas most in need. While the Fund’s goals are enshrined in law, actual implementation has lagged: only a fraction of the entitlement has historically been disbursed despite statutory requirements.
According to a Treasury review, while counties were supposed to have received substantial funding allocations, only KSh 15.9 billion had been paid into the Fund by mid-2025, leaving a KSh 46.9 billion arrears on projected entitlements. The COB’s alarm follows repeated delays by the National Treasury in releasing funds earmarked for the Equalisation Fund.
These delays have compounded longstanding issues around inadequate appropriations and incomplete disbursements. A 2025 Auditor-General report found that only about KSh 13.4 billion of an expected entitlement of nearly KSh 60 billion had been transferred to the Fund, a situation that has left many counties struggling to implement approved projects such as boreholes, health clinics and rural feeder roads.
Complaints from county governments and development stakeholders resonate with concerns raised in Parliamentary debates that funds allocated for the Equalisation Fund were often not released during the financial year, despite being included in annual budgets.
Lawmakers have lamented that appropriation without actual cash disbursement renders planning and project execution virtually impossible. County officials in affected regions have said the funding gaps have forced them to postpone or cancel priority development plans.
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In recent parliamentary sessions, lawmakers have debated not only the funding shortfalls but also which counties should benefit from the Equalisation Fund, noting significant shifts in how marginalisation is defined and applied. Originally intended to assist Kenya’s 14 most marginalised counties, including Turkana, Mandera, Marsabit, Samburu, West Pokot, Wajir, Narok, Garissa, Kilifi, Kwale, Lamu, Taita Taveta, Tana River and Isiolo, the list was expanded under new policy frameworks to include 34 counties with marginalised sub-locations across the country.
Critics in the Senate have argued this broad expansion risks diluting resources and undermining the original constitutional intent of targeting the most disadvantaged, while proponents say a wider set of regions face significant service gaps that merit support.
Major beneficiaries under the contested framework include Turkana (approximately Sh1.86 billion), West Pokot (about Sh1.66 billion), Wajir (Sh1.18 billion), Mandera (Sh1.22 billion), Narok (Sh1.25 billion) and Samburu (Sh1.05 billion) for the 2025/26 financial year, among others earmarked for smaller allocations that support water, health and road services.
In some cases, pending Equalisation Fund transfers have left communities without potable water, reliable health facilities or accessible rural roads months after project approval. The issue has also sparked discussions about whether current eligibility criteria and administrative arrangements adequately reflect the needs of marginalised areas.
Earlier policies identified a limited number of counties as beneficiaries, but later reviews expanded the list of marginalised areas using more precise deprivation metrics to ensure that funding reaches smaller communities within counties. Civil society groups and county leaders have called for better accountability and transparency in the administration of the Fund.
There is also pressure on the national government to speed up releases, ensure that appropriate allocations are honoured within the financial year and resolve procedural bottlenecks that contribute to cash flow problems at regional and local levels. Experts say that because the Equalisation Fund is designed to uplift some of Kenya’s poorest regions, continued shortfalls risk entrenching inequalities and undermining confidence in devolution, a cornerstone of Kenya’s governance system.
The COB’s latest alert puts renewed focus on budget implementation and delivery of devolved resources. The Treasury is expected to respond with updated disbursement schedules, and Parliament may revisit funding mechanisms during the next Division of Revenue Bill negotiations. Stakeholders are also expected to push for structural reforms that ensure timelier release of funds, clearer accountability frameworks and more robust monitoring of project execution to ensure that the intent of the Equalisation Fund is realised on the ground.

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